PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe1G132600.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family MYB
Protein Properties Length: 337aa    MW: 37211.4 Da    PI: 7.163
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe1G132600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.11.5e-161462148
                       TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                       +g+W++eEd +l+++++++G+g +W + +++ g++R++k+c++rw++yl
  Aqcoe1G132600.1.p 14 KGPWSPEEDTRLKEYIEKFGTGgNWIALPQKAGLKRCGKSCRLRWLNYL 62
                       79*********************************************97 PP

2Myb_DNA-binding36.61e-1169111246
                        SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
    Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                        g ++ +Ed+ +  +++  G++ W+ Ia+ ++ gRt++++k++w++
  Aqcoe1G132600.1.p  69 GQFSDDEDKVICSLFASIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111
                        789******************.*********.***********97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129420.657966IPR017930Myb domain
SuperFamilySSF466898.98E-2711109IPR009057Homeodomain-like
SMARTSM007174.2E-121364IPR001005SANT/Myb domain
PfamPF002491.5E-151462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.7E-231569IPR009057Homeodomain-like
CDDcd001676.23E-91662No hitNo description
PROSITE profilePS5129415.20467117IPR017930Myb domain
SMARTSM007171.1E-967115IPR001005SANT/Myb domain
PfamPF002491.8E-1069111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.3E-2270116IPR009057Homeodomain-like
CDDcd001674.01E-771113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MGRAPCCDKA NVKKGPWSPE EDTRLKEYIE KFGTGGNWIA LPQKAGLKRC GKSCRLRWLN  60
YLRPNIKHGQ FSDDEDKVIC SLFASIGSRW SIIAAQLPGR TDNDIKNYWN TKLKKKFMGF  120
VPSSQIKALP PIFPSPFHTG STYDYYPLSK SLPDLESLSI PSNFLNNTNT TTSIISTSLH  180
ESQQNLEGFM HHYQEKDNFL IFGGEPSCSS SDGSCTNQIS YNKDIEYDYS GNGNGGGGGG  240
GNGPNGVRLG QESYFCNGVQ DNQKFMLGNG SIGSNGWSDQ RLNSGLMWGD DQTSLPLDHH  300
HYDGLEDIKL VKNSSGSCSN IFNGDETKAQ SRIMYF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-25141167107B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010241795.11e-118PREDICTED: transcription factor RAX2-like
TrEMBLU5GA631e-107U5GA63_POPTR; Uncharacterized protein
STRINGPOPTR_0006s12530.11e-107(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57620.15e-76myb domain protein 36